Re: [Brahms-dev-l] new brat version and global tracking stuff

From: Djamel Ouerdane <ouerdane@nbi.dk>
Date: Mon Jun 14 2004 - 09:43:34 EDT
> This is very good, but remember that high field runs might require more 
> than 2 sequences to
> obtain a reasonable statistics to make a fit. I would sugest to add 
> criterium related to the number of tracks (track's combinations).
> More general question: how do you fit if the matching peak seats
> on the large combinatorial background?
> 

Ciao Pawel,

Two things:

1- the BrModuleMatchTrack stuff does not depend on the number of sequences 
(that would be a bit crazy :).  It means that it's up to you to use the 
new option:

* at the bratmain script level:
if you want to fit and save at the end of a job (I'm talking generic 
here, it could be one sequence or 1000):

SetFitOffset(kTRUE); // false by default
SetOffsetFile("<some file name">);

if you want to read the file and apply the offset:

SetReadOffset(kTRUE); // false by default
SetOffsetFile("<some file name">);


2- now, the sh script I made is based on 2 sequences but it was not meant 
for production. Hiro finished or is about to finish the official scripts 
(condor stuff) and you'll be able to specify how many sequences you want 
to group together. So, no worry to have :)


The whole point of this change to BrModuleMatchTrack is to create tmp
offset files on the fly for batch jobs (i.e. official production). If you
use the module for your own purpose, you can directly set the offsets and
widths in your bratmain config I think (like in the old days :).

Djam



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Djamel Ouerdane ------------------------------------------o
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Received on Mon Jun 14 09:44:58 2004

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